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  "Title": "High-Dimensional Mediation Analysis via Transfer Learning",
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  "Description": "Provides a framework for high-dimensional mediation\nanalysis using transfer learning. The main function TransHDM()\nintegrates large-scale source data to improve the detection\npower of potential mediators in small-sample target studies. It\naddresses data heterogeneity via transfer regularization and\ndebiased estimation while controlling the false discovery rate.\nThe package also includes utilities for data generation\n(gen_simData_homo(), gen_simData_hetero()), baseline methods\nsuch as lasso() and dblasso(), sure independence screening via\nSIS(), and model diagnostics through source_detection(). The\nmethodology is described in Pan et al. (2025)\n<doi:10.1093/bib/bbaf460>.",
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