Package: TransHDM 1.1.3

Huer Gao
TransHDM: High-Dimensional Mediation Analysis via Transfer Learning
Provides a framework for high-dimensional mediation analysis using transfer learning. The main function TransHDM() integrates large-scale source data to improve the detection power of potential mediators in small-sample target studies. It addresses data heterogeneity via transfer regularization and debiased estimation while controlling the false discovery rate. The package also includes utilities for data generation (gen_simData_homo(), gen_simData_hetero()), baseline methods such as lasso() and dblasso(), sure independence screening via SIS(), and model diagnostics through source_detection(). The methodology is described in Pan et al. (2025) <doi:10.1093/bib/bbaf460>.
Authors:
TransHDM_1.1.3.tar.gz
TransHDM_1.1.3.zip(r-4.7-any)TransHDM_1.1.3.zip(r-4.6-any)TransHDM_1.1.3.zip(r-4.5-any)
TransHDM_1.1.3.tgz(r-4.6-any)TransHDM_1.1.3.tgz(r-4.5-any)
TransHDM_1.1.3.tar.gz(r-4.7-any)TransHDM_1.1.3.tar.gz(r-4.6-any)
TransHDM_1.1.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
TransHDM/json (API)
| # Install 'TransHDM' in R: |
| install.packages('TransHDM', repos = c('https://gaohuer.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/gaohuer/transhdm/issues
- inflam_effect - Inflammatory Mediation Benchmark Data: Ground Truth Effects
- inflam_external1 - Inflammatory Mediation Benchmark Data: Transferable External Cohort
- inflam_external2 - Inflammatory Mediation Benchmark Data: Non-Transferable External Cohort
- inflam_target - Inflammatory Mediation Benchmark Data: Target Cohort
Last updated from:b6fabb41c5. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 208 | ||
| source / vignettes | OK | 445 | ||
| linux-release | OK | 231 | ||
| macos-release | OK | 233 | ||
| macos-oldrel | OK | 205 | ||
| windows-devel | OK | 144 | ||
| windows-release | OK | 161 | ||
| windows-oldrel | OK | 132 | ||
| wasm-release | OK | 113 |
Exports:gen_simData_heterogen_simData_homojoint_testmediation_inferenceSISsource_detectionTransHDM
Dependencies:caretclasscliclockcodetoolscpp11data.tablediagramdigestdoParalleldplyre1071farverfdrtoolforeachfuturefuture.applygenericsggplot2glmnetglobalsgluegowergtablehardhatHDMTipredisobanditeratorsKernSmoothlabelinglatticelavalifecyclelistenvlubridatemagrittrMASSMatrixModelMetricsnlmennetnumDerivparallellypillarpkgconfigplyrpROCprodlimprogressrproxypurrrqvalueR6RColorBrewerRcppRcppEigenrecipesreshape2rlangrpartS7scalesshapesparsevctrsSQUAREMstringistringrsurvivaltibbletidyrtidyselecttimechangetimeDatetzdbutf8vctrsviridisLitewithr
